Logiciels

SimClone: forward simulations of diploid populations at increasing rates of clonality to analyse their relationships with clonal richness, distribution of clonal sizes, FIS and linkage disequilibrium.

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Stoeckel, S., Porro, B., & Arnaud-Haond, S. (2019). Revising upward our appraisal of clonal rates in partially clonal organisms: the discernible and the hidden effects of clonality on the genotypic and genetic states of populations. ArXiv:1902.09365 [q-Bio] v4 peer-reviewed and recommended by Peer Community in Evolutionary Biology. Retrieved from https://arxiv.org/abs/1902.09365v4  doi: arXiv:1902.09365

https://zenodo.org/record/3666344

Contact: S. Stoeckel

ClonEstiMate 1.02

Becheler Ronan, Masson Jean-Pierre, Arnaud-Haond Sophie, Halkett Fabien, Mariette Stéphanie, Guillemin Maire-Laure, Valéro Myriam, Destombe Christophe, Stoeckel Solenn (2017). ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps. Molecular Ecology Resources, 17, e251–e267. https://doi.org/10.1111/1755-0998.12698

Téléchargement du programme pour GNU/Linux

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Contact : S. Stoeckel

XPloidAssignment 1.0

Montecinos AE, Guillemin M-L, Couceiro L, Peters AF, Stoeckel S & Valero M (2017). Hybridization between two cryptic filamentous brown seaweeds along the shore: Analysing pre- and post-zygotic barriers in populations of individuals with varying ploidy levels. Molecular Ecology, Accepted manuscript online: 12 March 2017. http://onlinelibrary.wiley.com/doi/10.1111/mec.14098/full

Téléchargement du programme pour GNU/Linux

Téléchargement du programme pour Windows

Contact : S. Stoeckel

Mamoth

Reichel, K., Bahier, V., Midoux, C., Parisey, N., Masson, J.-P. & Stoeckel, S. (2015). Interpretation and approximation tools for big, dense Markov chain transition matrices in population genetics. Algorithms for Molecular Biology, 10, 31. pdf

Téléchargement du programme

Contact : K. Reichel

Pasex

Stoeckel S. & Masson J.P. (2014). The Exact Distributions of FIS under Partial Asexuality in Small Finite Populations with Mutation. PLoS ONE, 9(1): e85228. pdf

Téléchargement du programme

Contact : S. Stoeckel